rs49754666 SNP Detail

Summary

• ID
  rs49754666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57600278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTATAGA GCAAAGATTC
  CACACACAAG TGACACTTTG GTGTTGTAAT TGCCATCCCC TGACTTTTGA ATTTATCACT
  CAAGAAAAGC CTATCAAAGA ACCCATCAGA ATACGGGCTT CAGTAGGGTG CACCAGTGTA
  CAGCAAAGCA AATAAAGTTG ATTTTATTGA ATGAGGTGGT CCTGAAAATT CTCTGTAAAA
  Y
  GTCTGCATGG AAGCATTCTA GTTTCCATAA CAACTTTGTG TACTTGTTCT CTGGCAGTGT
  GTCCAATCCT GCCATGGGTT TACAGAACAA TACCCATTTG TACCAGAAAA ATGAAAGTGG
  CCTTTCCCTT CCCATTCTTG CATAATAAAA TCTGCCTCAT AGCAACACAA TAGAAATGAT
  ATTTCTTTCA GTCTTTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60414469	NES15915188	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49754666					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414469	NES15915188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57600278 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	320 bp upstream
Rr577155	regulatory region 577155	729 bp distal
Tssr33337	transcription start site region 33337	308 bp upstream