rs49749899 SNP Detail

Summary

• ID
  rs49749899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164036623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTATAT ATACAACAAG
  ACTTTTTTTT TTTTCAAAAA TAAATTAATT CACAAATTCC TTTTTTTCTT CTTTTGAATT
  TAGCTTATTG GGAGCCCAGA TTAGCACGAT TAAACAATGC TGGTTCATAC AATGCTTGGA
  GTATAGAAAA AACTGCATTA GATTTTCCCA TTAAACCTTG GATCCAGGTA CGTCTAACTA
  R
  CCTCATAATA TTGGTTACGA TGATGACAAC ACAGGTCGTG GGTTTAGTTG TTTCTTGAAA
  TGGCAATGAA GGAAACAGCC CTGAGTAGAT GTAGTTACTG TTCTCAGTGG TTGCTTTCTC
  ATAATTGACA ATGAGAGGTA GGTCAAGTAA TTTTCAGTCT ATGAAAGAAA CCCCAGCAAC
  AAAGGTGTCA ACTGCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60338264	NES15832815	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49749899					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338264	NES15832815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164036623 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	284 bp distal
Rr422162	regulatory region 422162	1928 bp proximal