rs49746311 SNP Detail

Summary

• ID
  rs49746311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88736874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTGGACTTT AAAGGACTTT GTAACAAATG AAAAGGGCAG
  AGTGGCTATT CTCTCTGTGA CAATCTATAA GGGTCTAGGG ATCTGGAGAC AAAGGAGATA
  K
  TCCCAATTTC TTTGGCTTCT GCTCAGACCA GAATTTTTTT AAAAAATTAG ACTATTTAAT
  TTCTTTAAAA AAAAACAAAA GGGCTGGAGA GATAGCTTAG T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss135472241	ENSMUSSNP5505839	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49746311					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88736874 () rs orientation: forward

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	1652 bp upstream
Rr375322	regulatory region 375322	748 bp upstream
Rr579901	regulatory region 579901	1359 bp proximal
Rr579902	regulatory region 579902	1881 bp proximal