rs49744411 SNP Detail

Summary

• ID
  rs49744411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19400430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACCTGG AAAATTCTCA
  CTCATCTGAA GTTAGGATAC TTTATGCTAC AAGATAATTT TAGCAGGAGA ATCTGTTGCA
  TAGCATTTGC TTTCTCAGGA CTGTGCCAAT AGTGCTTTCA TTTCAAGGAC TTTTCCCAGG
  AATTCCTGCC TTCAGTTGTC TGGGCACCCC CTTACTTCTT TTTTCCAACA CCTTTCTTCC
  Y
  CTCACTAGAT TTCATTTATT TTGTTGCTTA ATTTTTCCCC AAGTCTTTTT TTAAAATAAT
  ATTTCCCTAA AATTTCGCTC AGAGTTTCAG TTTACCAATC ACAAAAATTC CTTGTTCTTT
  GACTGCTTCA TTTTTTTTTT TTTCAGTTAA ACTCTGGAGA GCGGGCACCT TAGTTATTTC
  CATCTGTCAT GTTGATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134667095	ENSMUSSNP3884489	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49744411					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19400430 () rs orientation: forward

Symbol	Name	Function Class
Rr573976	regulatory region 573976	1979 bp proximal