rs49744360 SNP Detail

Summary

• ID
  rs49744360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:84083813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTCAGA GTAGAAGGAC
  CAGGTTGTAT AAGGAAGGCT TCCTGGAGCA GGCAGGTCCG CGATGAGGTG AGTACCCAGT
  AGGCTGGCAG TGGGTAAGGA CTTATGTATA CAAGCACCTG CCTCTGTGGT GTGTATAGAT
  AGCTCTGGTG AACAAGCGCA TTCCACCTGT CTCTCACAGC CAGCCCCTGT GTGACATCCA
  Y
  GAGATACCTT CTGCCACCCA CCTTGATCAG TACCTGCTCC GGCTACGCAC CCGTCACCTG
  AGCCAGATCA AAGAAGCTGC TCTGGCCTTG AAGCTTGGCC ATAGTGAGCT CTCCACTGCC
  CTGGAGCAGG CCGAGGACTG GCTTCTGCAT CTCCGTGCCC TGGCCGAGGA GGTAGTGAAT
  CTTGTGGGGG CCTTTCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905309	NES15953037	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49744360					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905309	NES15953037	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:84083813 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17624	CpG island 17624			819 bp distal
Dysf	dysferlin			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm15475	predicted gene 15475			within coordinates
Rr632995	regulatory region 632995			187 bp distal
Tssr61719	transcription start site region 61719			138 bp downstream