rs49743969 SNP Detail

Summary

• ID
  rs49743969
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG TCTTTGAGTT CTGGAAGAGA
  K
  CATCACTAGG TGGCTTCCTA CAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60345143	NES15844851	PERLEGEN	MM_PANEL2	f	SNP	T		T	G	G	T	T	T	G	T	T		G	T	T	T		T
ss146150309	ENSMUSSNP2366060	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						G
ss320115467	CHEV_1_172927782	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49743969					SNP	T	T	T	G	G	T	T	T	G	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345143	NES15844851	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825220 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	1925 bp distal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	1914 bp distal
Rr396544	regulatory region 396544	42 bp upstream
Rr396545	regulatory region 396545	780 bp upstream
Rr423178	regulatory region 423178	595 bp distal
Rr423179	regulatory region 423179	678 bp distal
Rr423180	regulatory region 423180	180 bp proximal
Tssr9941	transcription start site region 9941	914 bp upstream