rs49735800 SNP Detail

Summary

• ID
  rs49735800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130741356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGAGACA ACCAAAGTGG TTCTCATCAC TCTCTCACTG
  TGTAGCTAGC TCATGAACAT GTTAGGTTTA ATCTTACAAT TCTTAATGAC ACATCCTTCC
  Y
  TCATTATTAG AACAATTTTT CTAGCATTGA ATGTTAGCAT AGGATAACCC TGGGCTGCTT
  CTGCCCAGCC ATGGAATGAA CTGAGGCAGG GGGTGTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135902631	ENSMUSSNP2638444	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49735800					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130741356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13830	CpG island 13830	1334 bp distal
Gm65596	predicted gene, 65596	315 bp upstream
Rr585244	regulatory region 585244	326 bp distal
Rr585245	regulatory region 585245	18 bp distal
Tssr35670	transcription start site region 35670	368 bp upstream