rs49733707 SNP Detail

Summary

• ID
  rs49733707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG CAGTGAGGCT TGGAGGAAGT
  Y
  TGGAGGGAAG GACGCCCTGA CAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145546445	ENSMUSSNP4475941	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss319993414	CHEV_1_137687639	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49733707					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718800 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	1017 bp upstream
Rr419278	regulatory region 419278	1912 bp distal
Rr419280	regulatory region 419280	761 bp distal
Rr419281	regulatory region 419281	1036 bp distal
Rr419282	regulatory region 419282	1175 bp proximal
Rr419283	regulatory region 419283	1807 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron