rs49725370 SNP Detail

Summary

• ID
  rs49725370
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCTGTCTT GTCCAGAGGC CCGGCCCAGA CTCCAGAGTC
  GTTGTTCAAG GAAGATGATG TACTGTATGG ACCAGTGAGT AAGCATAAGG CTGCAGAGCC
  S
  GAGCCACAGG CCAGAGTCCC ACAACACTGC TTTCCTATCT TCAATGAAGA GAGAACCGGG
  AAACCACACA CAGATGCTTC TTCAAGCCCT TTGAAGATC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978258	MGP_WTSI_2_144097979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	C	G	G	C	C	G	G	C	G	C	G	G	G	C	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs49725370					SNP	C	C	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	C	G	G	C	C	G	G	C	G	C	G	G	G	C	C	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978258	MGP_WTSI_2_144097979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	878 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Coding-Synonymous
Rr373996	regulatory region 373996	1882 bp upstream
Rr397362	regulatory region 397362	1191 bp downstream
Rr397363	regulatory region 397363	526 bp downstream
Rr566425	regulatory region 566425	1682 bp distal
Rr566426	regulatory region 566426	1292 bp distal
Rr566427	regulatory region 566427	595 bp distal
Snx5	sorting nexin 5	1450 bp upstream
Tssr20524	transcription start site region 20524	1652 bp downstream
Tssr20525	transcription start site region 20525	1571 bp downstream
Tssr20526	transcription start site region 20526	1294 bp downstream
Tssr20527	transcription start site region 20527	1188 bp downstream
Tssr20528	transcription start site region 20528	610 bp downstream
Tssr26595	transcription start site region 26595	1757 bp upstream
Tssr26596	transcription start site region 26596	1710 bp upstream
Tssr26597	transcription start site region 26597	1443 bp upstream
Tssr26598	transcription start site region 26598	1396 bp upstream
Tssr26599	transcription start site region 26599	1380 bp upstream