rs49714138 SNP Detail

Summary

• ID
  rs49714138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTT GCTCATCCGG ACACCCTCAG
  R
  CACTGGCTCA GACCTGGAAC CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147543401	ENSMUSSNP1398005	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321351522	CHEV_4_134831310	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49714138					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15068	CpG island 15068	1772 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1419 bp proximal