rs49713036 SNP Detail

Summary

• ID
  rs49713036
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147514998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTCCTGG ATAGAAGTGA ATGGTTACTC ACTTCAGATA
  GAGAGCTAAT GACAGAACAA ACTGAAGATG TCACCAAAAT TTAACTTGGT AAACCACTGA
  G
  TTTTACTGAG GTTGCTTACA GAAATATGGA TGAGGGGTTA CTTACAGGGC AGAAATGACT
  CAAAGACAAC CATTTCTCCA AAATATCATC CCTCATGTA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147959762	ENSMUSSNP5338138	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321414633	CHEV_4_146804650	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49713036					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147514998 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1471 bp downstream
Rr398815	regulatory region 398815	1030 bp downstream
Rr398816	regulatory region 398816	124 bp downstream
Rr398817	regulatory region 398817	448 bp upstream
Rr604487	regulatory region 604487	1614 bp proximal