rs49711149 SNP Detail

Summary

• ID
  rs49711149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115974206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAGCTG CACTCATCAT
  ATTAATATCT GTAAACTCTC CAGAGTTACA AATAATGCTA ACAAGGAGCT TATCCACTCA
  TCTCCATAAA CAGCTGGTAC AGGAATCCTT TCTCGGGAAG CAGAAATTAG GAAAGCACCC
  TCTATCCAGC CTCAACATTT CCACATACCC TCAAGTCTTA GGAGCTGAGA CTCCTGCATC
  R
  AAAGCTCTGG CTTCTTGGGG TTCGATGAGA AGTCCAAGCT TTTTTGATGG AGTTTTGTTT
  GGAAGTTGTG ATTTCTCCAT GGCCACTACT GAGACCCAGG TGACCTTTTC TCATGATTCC
  AAAGCAGCAG CCAAAAACCA GCATTTTGAA ACTGAATCTG GGACAAAGGT TATAAACCGG
  AGGCCTCACA GTGTTCTCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60438046	NES15933437	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	G	A	A		A
ss320894504	CHEV_3_115883475	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49711149					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60438046	NES15933437	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115974206 () rs orientation: forward

Symbol	Name	Function Class
Rr583660	regulatory region 583660	within coordinates