rs49710899 SNP Detail

Summary

• ID
  rs49710899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121089271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCACATTC CTTCCTAATT CATTCTAGAA CCCGGGAAAG
  CAAAACAAAA CAAAACGGTC TTTTCTCCTT TGAAAATATC TGATGGGGAG GGAAGTACAT
  Y
  TTGTGTGCTT GTCTTTCTGT GTGCTTCTGT GTTACTAAAA ACTTATTCTT AGAACAACAA
  AGGAGGGAGG GATGAAAGAG CTTTCTGGGT GAAAGAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135717711	ENSMUSSNP5010527	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49710899					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121089271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Rr584041	regulatory region 584041			1325 bp distal
Rr584042	regulatory region 584042			1205 bp distal