rs49709086 SNP Detail

Summary

• ID
  rs49709086
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17254962 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A GGCTAACAGA ATCACAAGAG GAACAATCTC TAACCAGAGA
  CAACTATAAC AACAAACACC AGAGATAACC AGATGGTGAA AGGTAAATGT AAGAATCTTA
  B
  TAACAGAAAC CAAGACCACT CACCATCATC AGAACCCAGC ACTCCCACTT TGCCCAGTCC
  AGGGCACCTC AACACACCCG AAAAGCTAGA CCTGTATTTA A                    
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136175342	ENSMUSSNP1848594	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss146804133	ENSMUSSNP4235805	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49709086					SNP	?	C	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17254962 () rs orientation: reverse

Symbol	Name	Function Class
Rr573816	regulatory region 573816	1049 bp proximal