rs49702672 SNP Detail

Summary

• ID
  rs49702672
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146788980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACAAA CAAACACACA
  CACACACAGA CAGCACGGAC TAGAGATCAG TTGGAACGTA GATGTGCTTC AGCTATCAGG
  ATAGGAAGTT TATTATTTTT CACTGCTTGT TTTATTAATG TGACTCAGGT TCCTTGTTGC
  TTTAATCCCC TTTATTAGGA CTGGCTGGAA GTGCTGTCAT TATTTGCCAT TTCAGTGCCT
  S
  GGGTTCCCTG TTTTATTCTG AATTTTCCTT GCCAACTTCT TTTGACATGA AAGCGAAATG
  TTGTTTGGGT TAGATGTGCG AATGGGTCTA GGGTGGGTGT TTTATATGAA AACAATCACA
  GAAAATCAGT TGTGTGAGCA AATTCTATCT TCAGGCGAAT TTCTGCTTTG GCTGCAAATG
  ATACGGCACT GAAATGTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096465	NES16601134	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49702672					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096465	NES16601134	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146788980 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	1925 bp upstream
Rr587119	regulatory region 587119	308 bp distal
Rr587120	regulatory region 587120	156 bp proximal
Rr587121	regulatory region 587121	1784 bp proximal