rs49702448 SNP Detail

Summary

• ID
  rs49702448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119541191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCATAAT TCCTCCATTG GGTTCCCCGT GGCTGCGAGC
  ATCTGCATCT GTATTGGTCA GGCTCTGGCA GAGCCTCTCA GGAGACAGCT AACCACCAAG
  Y
  TATCCTTCCA GCTCCTCTAA GGCTGTTTTG AGGTATCATG CTTTCTCATG TCAGAGCTGG
  GAGGGGCTCG CTCACACTGT GAATAGTGGG GGGGGGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133590986	ENSMUSSNP2342471	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321928714	CHEV_6_119514248	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49702448					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119541191 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	1994 bp upstream
Rr637713	regulatory region 637713	1371 bp distal
Rr637714	regulatory region 637714	552 bp distal
Rr637715	regulatory region 637715	1290 bp proximal