rs49697367 SNP Detail

Summary

• ID
  rs49697367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172317429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA ATCCAATCAG CCCATAGGCT
  Y
  TGAGTCGGGA ACTTTCACTC CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011505	PARCsnp_1.19831	PARC_SEQ	INBRED	f	SNP		C	T
ss120014503	PARCsnp_1.09872	PARC_SEQ	INBRED	f	SNP		C	T
ss146193582	ENSMUSSNP1430792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320125696	CHEV_1_174419993	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49697367					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172317429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			651 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr423587	regulatory region 423587			726 bp distal
Rr423588	regulatory region 423588			154 bp distal
Rr423589	regulatory region 423589			705 bp proximal
Rr423590	regulatory region 423590			884 bp proximal