rs49697241 SNP Detail

Summary

• ID
  rs49697241
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCATCCA TCCATCCATC
  CATCCATCCA TCCATCCATC ATCTACCTAA ACAATTTAAA GTGCATTTTG TTGGTTAACT
  TTGCCATACA TACTTTGAGC AAAATGAATA AGTACAATTT AGAGACTAAT TCATATATAT
  GCATTGTTTC TCAAGGGCAC TGGTCAGGTT CAACCTTCTT TCTAGAAAGT TCTCATTATT
  S
  TCCTCCGTGG ATGGAGATAT TACTTTTCTC ACTAGCCCTG AAGAATCATC CACGCCTCAT
  AACTTTGAGT TTTAATCTAA CATCACAAAC TAATATTGGC ACATCCCAAA GTCCCAGGTC
  TAAATTAGAC TCAAGTATAT TATGCTTTGC CATTCGTAGC TCAGTGATTT CATGCAAGTG
  ACTTAAAATC TGAATCTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115174	ENSMUSSNP4060635	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss320438721	CHEV_2_102388932	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49697241					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	991 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	1237 bp upstream
Rr561703	regulatory region 561703	856 bp proximal
Tssr19094	transcription start site region 19094	1270 bp upstream
Tssr19095	transcription start site region 19095	1324 bp upstream
Tssr19096	transcription start site region 19096	1342 bp upstream
Tssr19097	transcription start site region 19097	1363 bp upstream