rs49696101 SNP Detail

Summary

• ID
  rs49696101
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109265759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC CAAAGTAGAA GCAAATCCCG
  A
  TTCCATCTGT AGACACTTAG TCTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147197604	ENSMUSSNP2482412	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321254103	CHEV_4_109081167	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49696101					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109265759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			660 bp distal
Rr597313	regulatory region 597313			1442 bp distal
Rr597314	regulatory region 597314			154 bp distal
Rr597315	regulatory region 597315			1926 bp proximal
Tssr38345	transcription start site region 38345			1799 bp downstream
Tssr38346	transcription start site region 38346			1443 bp downstream
Tssr38347	transcription start site region 38347			1397 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant