rs49690656 SNP Detail

Summary

• ID
  rs49690656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27255180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCTCTC ACATTTAAAC
  AACCCAGGCT AGTTCCCTAT CCTGCCACCC CCTCTCACCC TTCACCCTGT TCTTCTTTCT
  CCCTCTTTTC TTGGGTCATT GATCTCTCCA TCGATAGCTG TGCATTTGTT GAGTTTGCTT
  CTCTTCCTTC TCCCGTGAGT CCAGATAAGC ATCTCACTTT GTAGCTTGGA TGGCTTTGAA
  Y
  GTAGGGCTAT TCTTCTGCTT CTGCCTCCTA AGTGCTGGGT GATGGGTGTG AACCACCATC
  CCCAGCTTTG CTCAGTTACC TTTACATAAT TTGTTTCCCC CAACCAAGTC TGTCTTCCTC
  TGTCTAGTTA GAAGAGTCTC TTGAGGGGGA CAGGGCTGTG CTCCCCACCC CCACCCTATG
  TACCTAGCTT TGAAAACTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702710	ENSMUSSNP2240945	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49690656					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27255180 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit305	DNA Segment, Chr 3, Massachusetts Institute of Technology 305			1967 bp distal
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574365	regulatory region 574365			731 bp proximal