rs49688634 SNP Detail

Summary

• ID
  rs49688634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69416694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC GCTCGCACGA GCACACACAC
  Y
  CCAAGGTCCT ATTCAATCAC TGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146729497	ENSMUSSNP3619672	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320331726	CHEV_2_69424407	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49688634					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69416694 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	within coordinates
Cpgi11711	CpG island 11711	1620 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	321 bp upstream
Rr558427	regulatory region 558427	332 bp distal
Rr558428	regulatory region 558428	within coordinates
Rr558429	regulatory region 558429	729 bp proximal
Rr558430	regulatory region 558430	1206 bp proximal
Tssr24442	transcription start site region 24442	313 bp upstream