rs49687993 SNP Detail

Summary

• ID
  rs49687993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79961639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATAAACCA AATAGAACAG
  CTCATTGTTT GAATCCTTGG CCAAGACAAT TTTCAATCTT GGTAGCAAAA TGTTCTGTTA
  AAGTACAGAA TAGAACGCAT TTCCTTAGTT TATAACTAAT CTTGGAGTAC AATGACGATG
  TAAAATTACA ACAAATCACA TTGAAAATCT CAACAGCTGA GTGAGGGTGT TCAGCTTTCT
  M
  CAAAGAATAT ATCGAGGAAC ATTGATCTGT TTTGCTCATC AATTTAAGCT AAAATGTAAA
  GCTTCTGGAA AATGAGTAAG ATCAGGATGG GTTCTTATAA ATCAAGGTAT ACCACAGTAA
  AATATCCACT GTAAGTTCTG GGAAGAAAGG AGGAGAGCCA AGCAAACACA CTGAAGACAG
  GACAAACTGG AGCTAGCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146789820	ENSMUSSNP2690682	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss320362045	CHEV_2_79971452	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49687993					SNP	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79961639 () rs orientation: forward

Symbol	Name	Function Class
Gm13674	predicted gene 13674	635 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	1866 bp distal
Rr560062	regulatory region 560062	1347 bp distal
Tssr24924	transcription start site region 24924	1991 bp upstream
Tssr24925	transcription start site region 24925	1746 bp upstream