rs49685401 SNP Detail

Summary

• ID
  rs49685401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100251806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA ACCACCTTGG GGAGGTAGGA
  Y
  GAACAGATAG GCTAGCTAAC TGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147110501	ENSMUSSNP2214928	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321227031	CHEV_4_100067214	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49685401					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100251806 () rs orientation: forward

Symbol	Name	Function Class
Gm35760	predicted gene, 35760	within coordinates
Ror1	receptor tyrosine kinase-like orphan receptor 1	Intron
Rr595987	regulatory region 595987	165 bp distal
Rr595988	regulatory region 595988	628 bp proximal