rs49679781 SNP Detail

Summary

• ID
  rs49679781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79960572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGAGGACT TAATTCATAT AGCCTTTTAA AAAGTCTTAC
  GGGAAATGTT ATAAGACATT CCTATTTAAC TGTTGAAAAA ATACAAACAA ATGTTCTAGA
  K
  TTGCAATCCT AGTCTTTGAA GTGAGGGTTG TTGTCTTATT GGTAAGAAAC TTCCAATTAA
  AAAAAAAAAT ACTTCTAAAA CAAACCAAAA CAAAGCAAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146789752	ENSMUSSNP5553210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320362029	CHEV_2_79970385	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49679781					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79960572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11847	CpG island 11847	980 bp distal
Gm13674	predicted gene 13674	1702 bp upstream
Pde1a	phosphodiesterase 1A, calmodulin-dependent	Intron
Rr560061	regulatory region 560061	799 bp distal
Rr560062	regulatory region 560062	280 bp distal
Tssr24917	transcription start site region 24917	1232 bp upstream
Tssr24918	transcription start site region 24918	1205 bp upstream
Tssr24919	transcription start site region 24919	1090 bp upstream
Tssr24920	transcription start site region 24920	1055 bp upstream
Tssr24921	transcription start site region 24921	1036 bp upstream
Tssr24922	transcription start site region 24922	985 bp upstream
Tssr24923	transcription start site region 24923	950 bp upstream
Tssr24924	transcription start site region 24924	924 bp upstream
Tssr24925	transcription start site region 24925	679 bp upstream