rs49676289 SNP Detail

Summary

• ID
  rs49676289
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126417117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTAAATGT GAGGTTCAGT AGAATTAAGT ACACTCACCT
  TATCGGGCAA CTGTTATTAC TCTACATTCA TTTTTCTCTC CCATGGCTCT CCCCATAATC
  M
  CCCATGGTTC GACTCATAAT CCCTCATGGC TCCTCCTACA ATCCTCCGTG GTTTCCCATA
  ATCCTCCATG GCTCCGCCCA CAACCACCAA TGGTCCCGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135837315	ENSMUSSNP2265230	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49676289					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126417117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm64675	predicted gene, 64675			within coordinates
Rr584659	regulatory region 584659			1733 bp proximal