rs49676218 SNP Detail

Summary

• ID
  rs49676218
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127151423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAT TCTCAACCTT TCTGATGCTG
  S
  GACCCCTTAT AGGTCCTCAA GTTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147525477	ENSMUSSNP4262673	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49676218					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127151423 () rs orientation: forward

Symbol	Name	Function Class
Gm54150	predicted gene, 54150	within coordinates
Rr397283	regulatory region 397283	411 bp downstream
Rr397284	regulatory region 397284	1231 bp upstream
Rr564489	regulatory region 564489	1966 bp distal
Rr564490	regulatory region 564490	423 bp distal
Rr564491	regulatory region 564491	635 bp distal
Rr564492	regulatory region 564492	832 bp proximal
Rr564493	regulatory region 564493	1873 bp proximal