rs49675525 SNP Detail

Summary

• ID
  rs49675525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121219711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAAGGA CCCAAAAAGC
  TGTACCCCCT CCCCCCAAAA CCTGGCTGTG CCACAACACT TTCCCAATTT CTTTCGCTCT
  GCATTCAAAG TTTAGACAGG ATGAGCAGGA CTTTGGCAAA GAGCGTTGAC CGAGGCAGAG
  GTCAGCCCCA CAGGTGCGGC AGCTGCGTGG GGAGGGAGAC TTGGCAGATG TCCACGCAGG
  Y
  CTCCCCCCCC CGCCCCCGGC CTGGCACGTG GATTCGAAGG CTGCTCCCCG GGTTTCCAGC
  GCAACATCTG GGCGCGCTGT AGCCCGGGAG GAGACGGATG GAGTGGCCGG TCAGCGGCGG
  GCCAGCTCGG GGAGCTTCCT GTCCCCCTCC ACCGTCGGAG CGCCACAGAT GCCTGGGAGT
  TGATGAGAAC CAAGGCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135720541	ENSMUSSNP1117715	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49675525					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121219711 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	479 bp upstream
Cpgi13758	CpG island 13758	within coordinates
Gm42928	predicted gene 42928	within coordinates
Gm42929	predicted gene 42929	1984 bp upstream
Rr397975	regulatory region 397975	255 bp upstream
Rr584073	regulatory region 584073	within coordinates
Rr584074	regulatory region 584074	719 bp proximal
Tssr31441	transcription start site region 31441	433 bp upstream
Tssr31442	transcription start site region 31442	506 bp upstream
Tssr35415	transcription start site region 35415	1410 bp downstream