rs49674624 SNP Detail

Summary

• ID
  rs49674624
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149223919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAC TCAGAAATCC ACCTGCCTCT
  S
  CCTCCCAAGT GCTGGGATTA AAGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148028599	ENSMUSSNP1117261	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321425017	CHEV_4_148513571	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49674624					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149223919 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	1862 bp upstream
Cpgi15320	CpG island 15320	1641 bp distal
Rr398863	regulatory region 398863	1657 bp downstream
Rr604839	regulatory region 604839	1904 bp distal
Rr604840	regulatory region 604840	1419 bp distal
Rr604841	regulatory region 604841	1806 bp distal
Tssr44623	transcription start site region 44623	1867 bp upstream
Tssr44624	transcription start site region 44624	1837 bp upstream