rs49671736 SNP Detail

Summary

• ID
  rs49671736
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:9865671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC CTTATCCTAG TACCTATGAC
  G
  GGGCTAGGAG TGGAACCTGA GGTCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss134577444	ENSMUSSNP1146601	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320652020	CHEV_3_9800611	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49671736					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9865671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1			Intron
				mRNA-UTR
Rr573506	regulatory region 573506			496 bp distal
Rr573507	regulatory region 573507			1091 bp proximal
Tssr815	transcription start site region 815			1152 bp downstream
Tssr28350	transcription start site region 28350			1276 bp upstream
Tssr32587	transcription start site region 32587			1235 bp upstream
Tssr32588	transcription start site region 32588			983 bp downstream