rs49661692 SNP Detail

Summary

• ID
  rs49661692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70297438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCAAAGT AAACTGACCA AAGCACCGAC ATTGTGCCAC
  CTGAAGCTGT GAGATGCTTG TCTGCGGTGC ACACACAGTG CTCTAACTAC TGGTTCCCCC
  Y
  TGCAATTCTG ATTGCCATCA CCACTGCCTC CAAAAAGAGG CTATCCTTTG TCTTTCTGCC
  CTGACAGTAT AGGAAGAAAC TGCCTTCCGT GACAAGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146495417	ENSMUSSNP1342591	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49661692					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70297438 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1549 bp distal
Rr593866	regulatory region 593866	1646 bp distal
Tssr37622	transcription start site region 37622	1074 bp downstream
Tssr37623	transcription start site region 37623	1042 bp downstream
Tssr37624	transcription start site region 37624	985 bp downstream
Tssr37625	transcription start site region 37625	973 bp downstream
Tssr42116	transcription start site region 42116	1007 bp upstream
Tssr42117	transcription start site region 42117	987 bp upstream
Tssr42118	transcription start site region 42118	939 bp upstream