rs49659919 SNP Detail

Summary

• ID
  rs49659919
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5153570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTACGT AAATCAAGAT
  GACTATAGTA ATCTTCTGTT TATCTTGTGG CAACAATCAA AATGTGAAAA TACGTATAAT
  GTTAAGTTTG ATATGGTTAG CAAATGAGTA TTAGGTAAAA TTTAAAACAC ATAGACAGAA
  ACACACACAC ACACACACAC ACACACACAG AGGACTCCTT TCTTAGCATG TTTAGAGTGA
  Y
  TAGTCCTCAA TATGGGTTCC TGCTACCTTG AAGAATTCAC CTGCTACCTG TACAAGATGA
  AGGTATAATG ACTCCTTCAA AAAAATCAGG AAGGTGTTAT TTAAAAGTTT TCGAATACTT
  ATAATTCTAA CCAGCGGAGA TAGGTAAATA CTGTCATCAG TAGAACTGTA AGCATTTCAA
  ATATGTGTCT GACTTGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366982	NES15869420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49659919					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366982	NES15869420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5153570 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	11 bp distal
Gm17308	predicted gene, 17308	1766 bp upstream
Rr573165	regulatory region 573165	301 bp proximal
Rr573166	regulatory region 573166	1192 bp proximal
Rr573167	regulatory region 573167	1451 bp proximal
Rr573168	regulatory region 573168	1777 bp proximal
Tssr28264	transcription start site region 28264	1758 bp upstream