rs49659697 SNP Detail

Summary

• ID
  rs49659697
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29123339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAATTCAC CAGCGTGCAA
  TAGACTCAGA TCTGTGAGGC TGAAGAACTT GTCTCTGAGT GTTTATTAGA ATCAAGCAAC
  ATGGTATGAG GCTAGATGGT ACTAAATGGG AGAAAAGGTA GAAGGAAGAG CAGAGAGAAC
  ACCAAAACAT AAAATACAAA TATGATGTGG TTTGGAAATG GCTTGGTTTA TCTTGGCATA
  M
  AGGACCATTT GAAGGCATGA CCCAATATTG AATCGTTTCC CTCCAGTTGG ATGTGTGTCT
  TCTAACACCC ACACTACCAT TGCTGACTGT ACCCATTACT TATAAGTCTT GTTCTCTCTG
  GGATAGATTA TATTCCCTTC TGTCCTAATA CCTTAACACT TGTTATTTCT TCTGCCTGCA
  AGACTTGTAC CCTAGAGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381961	NES15888751	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49659697					SNP	A	C	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381961	NES15888751	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29123339 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	294 bp distal