rs49656643 SNP Detail

Summary

• ID
  rs49656643
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145643928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CGTCGGATGA GAACAGCGAG CCGGAAGACG CGGGTCGCAA GGAGGCGGCC
  C
  CGGCTCCGAC GACGGGCGGC CGCGGGAAGC AGGCGGAGAA GCGGCTGCCC           
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136040813	ENSMUSSNP1530992	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321009172	CHEV_3_145601137	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49656643					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145643928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr398108	regulatory region 398108			39 bp downstream
Rr586873	regulatory region 586873			149 bp distal
Rr586874	regulatory region 586874			203 bp distal
Rr586875	regulatory region 586875			within coordinates
Rr586876	regulatory region 586876			1109 bp proximal
Tssr32317	transcription start site region 32317			110 bp downstream