rs49654175 SNP Detail

Summary

• ID
  rs49654175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143628086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCTCACT TTTAAATGTG
  TACAGACAAC AAGGATATCC AGATGGGTGG AAAAACCCAT TAGCATGAGA GAGATTTAAT
  TCAAAATATT TTTAGAAAGA ATAGCTGACG CCAAAAGAAA GAGAATTGAA AAGATGGAAG
  AACACTTTAA AACATGATCA TTGGCAACTT ACATGGGGTG AGTGAATAGG TGCTGGAGTT
  Y
  CCCTGACTTC AGTCTTCCTG CCTCCTGAAT CAGCAGCTTC TGATAGAAGT GACTGAGAGG
  AAAGAGAGTG AAAAGCTGAA TCATAATAGG TGGGATCGGG TGAAGAAATA CCAGGGCCTG
  ACTCATTTAC TGTTTCCTAA GCATTCAGTG CTGCGAGAAA CAATGTAAAC TGTGATATGG
  GCTCTGCTAA TTTGGGAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852186	NES15998152	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49654175					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852186	NES15998152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143628086 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	9 bp proximal