rs49651448 SNP Detail

Summary

• ID
  rs49651448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GGGCCAAGGG AAGAATATTT
  Y
  ACCATTAAGA GACACTGGTC AGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147598311	ENSMUSSNP858327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49651448					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908682 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	858 bp proximal
Tssr20240	transcription start site region 20240	1950 bp upstream
Tssr26336	transcription start site region 26336	524 bp downstream
Tssr26337	transcription start site region 26337	1363 bp downstream
Tssr26338	transcription start site region 26338	1693 bp downstream
Tssr26339	transcription start site region 26339	1767 bp downstream
Tssr26340	transcription start site region 26340	1849 bp downstream