rs49650856 SNP Detail

Summary

• ID
  rs49650856
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110171400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAATTCA GCTAGGGTGG
  TTTATAGTGG CAGTGGGAGG ATAAAGCAGA ACTGAAGGGT TTGGAAACCT TGTAGTCTAC
  TCAGAGAGAA AGCAGGAAAG CCTGGCAGCT GAAGCCGGTA GGACTGTTAA GGAAGCCAGA
  CGTAATACTC TGCAGCATAG CAGTAGCAAG GGCGCATTGA GAACGTCTCA GAAATCGGCC
  M
  GCTTCTGCCT ATAGCATCAC GCTCAAGCAC GGAAAGGCTT TAGCTCATTA GAGAGACTGC
  TTTGGGAAGG GAGCCCTGGG ATGCCCTGCT GCACAGGATT GCCTAGGGTT CTGCTGGGGC
  TCAGTTAGAG GTCCCTGCAG CCATGGCTTG AGGGGCCCTA GCTAGTGTTT GAGTTGGCAG
  ATCACAGTTT TTCAGAAATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61449575	NES16838493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49650856					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61449575	NES16838493	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110171400 () rs orientation: forward

Symbol	Name	Function Class
Rr687097	regulatory region 687097	1266 bp proximal
Scap	SREBF chaperone	Intron
Tssr87348	transcription start site region 87348	1739 bp upstream
Tssr87349	transcription start site region 87349	1831 bp upstream
Tssr87350	transcription start site region 87350	1853 bp upstream
Tssr87351	transcription start site region 87351	1877 bp upstream
Tssr87352	transcription start site region 87352	1919 bp upstream