rs49648014 SNP Detail

Summary

• ID
  rs49648014
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9115475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAAAG GGGCTCGAAT
  CCCCAGTGAG CAGAGGTCCA CAGCTCCACT CTTACAAGTT CTACCACCTT CCAGTAGTGC
  CACCGGCTGA GGGACAGGCT CCAGTGACCC TTTCCAGGTT CCAGCATCTG ATAGTATCTA
  GCTCTAGTAG GACTGAATCA AGTTTCAGAG ATGACCCAGG TAAAGGGAGA TAATTTGAGT
  W
  TGTCCTCTTA ATCTATGTGT CCTCCTAAGG ACGGATCAGA GGAAGGCAGA AAGACTGTGG
  GAAAGAATAC AGGGACTCTG TCATAAGTTC CTGTCACTCA AAACCACTCA CATGCCGCAC
  ATCATGATGG CCTCATCTAC AAAGTACTCA TAGCCACAGG TACGGCAGGG GAGTAAGACC
  TGTACTCATG GCCCTCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145985371	ENSMUSSNP2454346	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49648014					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9115475 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	380 bp proximal
Rr588668	regulatory region 588668	1626 bp proximal