rs49645535 SNP Detail

Summary

• ID
  rs49645535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173957597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TGAGCTCAGG GCGGGGGACT CGTGTGGGCA GGAGAGGCCT
  TGAAGCATCG TCCACGAATT GCTTCACTCG GTAAGACCTC CTCTGTTCCC CATAGGCACC
  R
  TGCCACGTTT TTTTTTTCCC CTCAGCGAGT TTTGTTGCCT AACAATACTT TGCAGTCATA
  GATGTTGGAA TGGATCTGTG TTCTCCCATC CCACACTGGC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148339633	ENSMUSSNP27059	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49645535					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173957597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepl1	aminopeptidase-like 1			Intron
				Noncoding-Transcript-Variant
Rr572073	regulatory region 572073			1076 bp proximal
Rr572074	regulatory region 572074			1341 bp proximal
Tssr788	transcription start site region 788			170 bp upstream