rs49645164 SNP Detail

Summary

• ID
  rs49645164
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19803101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTG AGTTCCAGGA CAGTGAGAAT
  A
  CACAGAGAAA CCGTGTCTGG ACAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139192982	ENSMUSSNP4658141	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324564015	CHEV_14_20572255	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49645164					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19803101 () rs orientation: forward

Symbol	Name	Function Class
Gm62268	predicted gene, 62268	1360 bp downstream
Gm62728	predicted gene, 62728	1887 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	984 bp downstream
Rr488149	regulatory region 488149	1898 bp distal
Rr488151	regulatory region 488151	1758 bp distal
Tssr124372	transcription start site region 124372	1741 bp downstream
Tssr127556	transcription start site region 127556	1887 bp upstream