rs49642927 SNP Detail

Summary

• ID
  rs49642927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41023983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTCTCTG AGCTCTGTAG GCCCGAAAGG CCCCTACCAC
  AGCAGCACTC GTTCCCACAC CGAGCTCTCT TCCTAGATCT GTCACTCTGC TCACTCTGAC
  K
  TGCCTATTTA ATTGACAACC GTGTATGCAG GTAAAACCTG TTTATTTTCC ATCTAGAAAT
  AAAACTTAGG CTAAGTGAAT TAACCAAGAC CAAGTGGACT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60399659	NES15901471	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs49642927					SNP	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399659	NES15901471	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41023983 () rs orientation: forward

Symbol	Name	Function Class
D3Mit326	DNA Segment, Chr 3, Massachusetts Institute of Technology-326	251 bp distal
Gm65493	predicted gene, 65493	798 bp downstream
Pgrmc2	progesterone receptor membrane component 2	Intron
Rr575890	regulatory region 575890	1097 bp proximal