rs49642669 SNP Detail

Summary

• ID
  rs49642669
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:15638728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACAGACC ACAATCAGAG
  GAAGCAGATA CAACGTAGTG ATGACGAATT AATAAGCACG TGGTGGCGAT GACCTACCTC
  TGAGCCAGAT TTCTTAGGAC CGTCAGAGCC CAGTTCACAC CTGCCGTGTC TGCACGGACG
  AGACGTCAGG CATCCTTCCC TTCTGCTCGG CACACAGCCC ACATGTTCAG TTATGGATAT
  K
  GAGGAAATGC TCTAGGAGAG TGTCTAGTAC TCCTGTCAGC GGAGACAAAA GCATTTGACA
  CATCCTGTCA GATGGCATTG ACTCAGGTAT TCCCGGCTGC CTTACATAAT GCGATGTGAA
  GGCAAGAGCG AAAGCTGGGG ATGGGCTGGT GGGAGAGGCA GAGTTTTACA AATCCACAAT
  TTAAAAGAAT TTGAGCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60865405	NES15989646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49642669					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60865405	NES15989646	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15638728 () rs orientation: forward

Symbol	Name	Function Class
Gm36352	predicted gene, 36352	within coordinates
Gm44039	predicted gene, 44039	360 bp downstream
Rr626670	regulatory region 626670	within coordinates
Rr626671	regulatory region 626671	665 bp proximal