rs49642516 SNP Detail

Summary

• ID
  rs49642516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC TTTAGCTTTC CTCACTTGCC
  R
  AGCTCCAACT TGGCCAGAAG CTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932512	NES16191113	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49642516					SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932512	NES16191113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150193 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	564 bp distal
Rr637289	regulatory region 637289	634 bp proximal
Rr637290	regulatory region 637290	819 bp proximal
Rr637291	regulatory region 637291	870 bp proximal
Tssr58392	transcription start site region 58392	1745 bp downstream
Tssr58393	transcription start site region 58393	1726 bp downstream
Tssr58394	transcription start site region 58394	1686 bp downstream
Tssr58395	transcription start site region 58395	260 bp upstream
Tssr58396	transcription start site region 58396	276 bp upstream
Tssr58397	transcription start site region 58397	314 bp upstream
Tssr58398	transcription start site region 58398	340 bp upstream
Tssr58399	transcription start site region 58399	362 bp upstream
Tssr58400	transcription start site region 58400	390 bp upstream
Tssr58401	transcription start site region 58401	426 bp upstream
Tssr58402	transcription start site region 58402	457 bp upstream
Tssr58403	transcription start site region 58403	475 bp upstream
Tssr58404	transcription start site region 58404	494 bp upstream
Tssr58405	transcription start site region 58405	536 bp upstream
Tssr58406	transcription start site region 58406	566 bp upstream
Tssr58407	transcription start site region 58407	597 bp upstream
Tssr58408	transcription start site region 58408	664 bp upstream
Tssr58409	transcription start site region 58409	686 bp upstream
Tssr58410	transcription start site region 58410	708 bp upstream
Tssr58411	transcription start site region 58411	724 bp upstream
Tssr58412	transcription start site region 58412	751 bp upstream
Tssr58413	transcription start site region 58413	764 bp upstream
Tssr58414	transcription start site region 58414	797 bp upstream
Tssr58415	transcription start site region 58415	812 bp upstream
Tssr58416	transcription start site region 58416	827 bp upstream
Tssr58417	transcription start site region 58417	881 bp upstream
Tssr58418	transcription start site region 58418	914 bp upstream
Tssr58419	transcription start site region 58419	933 bp upstream
Tssr58420	transcription start site region 58420	960 bp upstream
Tssr58421	transcription start site region 58421	979 bp upstream
Tssr58422	transcription start site region 58422	1005 bp upstream
Tssr58423	transcription start site region 58423	1013 bp upstream
Tssr58424	transcription start site region 58424	1075 bp upstream
Tssr58425	transcription start site region 58425	1120 bp upstream
Tssr58426	transcription start site region 58426	1142 bp upstream
Tssr58427	transcription start site region 58427	1169 bp upstream
Tssr58428	transcription start site region 58428	1184 bp upstream
Tssr58429	transcription start site region 58429	1249 bp upstream
Tssr58430	transcription start site region 58430	1294 bp upstream
Tssr58431	transcription start site region 58431	1390 bp upstream
Tssr58432	transcription start site region 58432	1463 bp upstream
Tssr58433	transcription start site region 58433	1499 bp upstream
Tssr58434	transcription start site region 58434	1937 bp upstream
Tssr62617	transcription start site region 62617	324 bp downstream
Tssr62618	transcription start site region 62618	346 bp downstream
Tssr62619	transcription start site region 62619	382 bp downstream
Tssr62620	transcription start site region 62620	425 bp downstream
Tssr62621	transcription start site region 62621	491 bp downstream
Tssr62622	transcription start site region 62622	1043 bp downstream
Tssr62623	transcription start site region 62623	1061 bp downstream
Tssr62624	transcription start site region 62624	1176 bp downstream
Tssr62625	transcription start site region 62625	1327 bp downstream
Tssr62626	transcription start site region 62626	1423 bp downstream
Tssr62627	transcription start site region 62627	1454 bp downstream
Tssr62628	transcription start site region 62628	1589 bp downstream
Tssr62629	transcription start site region 62629	1769 bp downstream