rs49642367 SNP Detail

Summary

• ID
  rs49642367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142146505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATTCACT GCTCTTTTAT
  TTAGAAAATA GTTTTAGATT CATTAAGCCT GTACTATATA TGGTTAAAGC ATTCCTTTGC
  AAATTTCCAA ATTACAGCAG GCATTTTGGT TACGGTCTGG AATCATTGTT AGAGCTGAGT
  GAGCCTCATG GAACAAGCTG CTCTCTCTTT CATGGGACCA CAGCTAGTCA CCTGTTCTCT
  Y
  CTTCAGGCTT CACCATGGAG AATAAAAGAC ATATGTCATA TGTATGTAAA GATATATTTA
  GAATGAGCTC TGAGGTATGT TGATATAGTA AAATATTAGT CTCTACCTCC AAACAACAGC
  ATATTCACAT ATTAAACCAG AGAAGCCAAT TGTTTCCCTG CATGTAGTGT CAGATGCTAA
  TTAATCAATT GTTGATGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61087296	NES16608303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49642367					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087296	NES16608303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142146505 () rs orientation: forward

Symbol	Name	Function Class
Gm33189	predicted gene, 33189	1848 bp downstream
Gm64781	predicted gene, 64781	1225 bp downstream
Rr586432	regulatory region 586432	2 bp distal
Rr586433	regulatory region 586433	1473 bp proximal