rs49639317 SNP Detail

Summary

• ID
  rs49639317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85182204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATGATG CAAAGATGCC
  ACAGAAAGAA TAGGCTTTAT TAGAGGGTAG ACGAGCCCCA GGCACTTGGA GCCCCAGACA
  CACGCGTGCA CGCGCGCGCA CACACACACA CACACACACA CACACACACA CACACACACG
  AACTGGGGAT TGGTCAAGTG AAATTTGTTG CATGTACCAT GCATGGCCCA GCAACTGGGT
  Y
  GTCTTGAGGC AAGCCCTCAG ACCTAGGGAG GGGGCTGTCT TTGGACATAC CACTTACTTC
  AGAGACCAGA AATACCTTTC TGAAGGCACT GGGTAAAATT GGTCCATATG TATCTCATTC
  TAAAAGTCAG TAGGCGGTGA ATTGAATAGA AGCTCATACC AAAATGCAGA GTGGAAAACA
  ACACCTGAGA AGAACTGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52449456	NES15419153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49639317					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52449456	NES15419153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85182204 () rs orientation: forward

Symbol	Name	Function Class
Dlst	dihydrolipoamide S-succinyltransferase	1339 bp downstream
Rps6kl1	ribosomal protein S6 kinase-like 1	mRNA-UTR
Rr469797	regulatory region 469797	1451 bp proximal