rs49639302 SNP Detail

Summary

• ID
  rs49639302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146796860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAAGCT CCCCACCCCC
  AAGACTGTAA CTGTCTTTGA GAACATTCTA GAATTTAGCA ATGAGCATGG TTCAACTGTG
  ACTCAGGGCC TCATGGAGTC CTGACCAGTG GGAAGGGGTG GAACCAAATC TGAAGTTAGC
  TGCTAATTCT TGGGATTTGT CAATAGGGAC AGAAGAAACA GCCATTCACG GCTGGATTGA
  Y
  GTTTATTTCA TTTGAGGCAG GGTCTCTAGT AGTCCAGGCT GACTTTGATT TAACTGTAGC
  GCAGGATAGC CTTAAACTCC CAATTCTCTT GCTTTCTCCC TTGTGCTTAG ACTTACAGAC
  TTTGACCACC ACACCCAGCT TTTGATTTTT TTTTTTTTTT TTTTTTGTAT TAGAAAATGT
  ACTTTCTTGG TCAATAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096408	NES16600916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49639302					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096408	NES16600916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146796860 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Rr375880	regulatory region 375880	819 bp upstream
Rr587122	regulatory region 587122	1177 bp proximal
Rr587123	regulatory region 587123	1544 bp proximal
Rr587124	regulatory region 587124	1649 bp proximal