rs49638242 SNP Detail

Summary

• ID
  rs49638242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15746592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTATGGGA AGGCCAGTGG
  AAATGAACTG CTAGGGAAAA GGTCCTGACT GAGTGGTTAC TTACCACTGG TGTTGAGTAA
  GTTATCTAAC ATCAGTCAAC TCCTCTTAGT CCCCAAATGG AGCCTAATAC CAGGAGGCTC
  ATTGTGTCAT TTTGAGGATT CTATCAGGAA CTTTGTGTTC CATTGAAGGA ACGGATGGTA
  Y
  GTTAGTTCAT CAGTGTGCAT TAGTATTATC CTTGAGCTGA GCTATGAATT TTAAGATATT
  TTTCTTTTCA TTATGGTGCA TTGAGCCAGA TGCTTGGAAG CACTACGATA TATAGACTAT
  GTTTTCTAAG ACCTCCTGAT ATCATGGCCA CGGGTTTGCT GCATTCAGCT GATTAAGAGC
  TTTAATGTGT TATAAAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60864999	NES15988529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49638242					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864999	NES15988529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15746592 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399574	regulatory region 399574	565 bp downstream
Rr626682	regulatory region 626682	855 bp distal
Rr626683	regulatory region 626683	327 bp distal
Rr626684	regulatory region 626684	1216 bp proximal
Tssr1783	transcription start site region 1783	1290 bp upstream