rs49637817 SNP Detail

Summary

• ID
  rs49637817
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153648110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTACTAA ATAAATTATA
  ACTCAAACGT CAATTACAAG CTAGAGGGAT GCCTAACCAT AAAGGAAATG TTATTCAATT
  TTATAGTTTT TCATTTGTGT GTCTATATAT GTGTGGTGAG GGTACAGGAT TCTCTGGAGT
  TGGAGTTACA TATAGTTCTG AGCCACCTAA CATCAGTGTT GAGAAGCCAA CTCAGGCCCT
  Y
  CGCAAGAGCA GTAAATATTA AATGAGAAAA AAATGTAAAT TGCTCAGTCA TTCTCATTCT
  CTCTCTCTCT CCCTCCCTTC CACCCTCCCT CCTTCCGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTTCAA GTGCAGTTTT TGGTGGTGCT GTTTGTTTTG TTTTTGAGAC AGGTCTCAAT
  ACGTAGCTGT GGCTGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136115250	ENSMUSSNP3406792	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321031885	CHEV_3_153605437	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49637817					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153648110 () rs orientation: forward

Symbol	Name	Function Class
Acadm	acyl-Coenzyme A dehydrogenase, medium chain	Intron
Cpgi13964	CpG island 13964	1507 bp proximal
D3Mit88	DNA segment, Chr 3, Massachusetts Institute of Technology 88	1365 bp distal
Rr587801	regulatory region 587801	494 bp proximal
Tssr36252	transcription start site region 36252	1952 bp downstream
Tssr36253	transcription start site region 36253	1988 bp downstream