rs49633072 SNP Detail

Summary

• ID
  rs49633072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTTAAG AAACCATGTG
  AGAAAGATGT TTGATAAACA AAGCGCCTCA GGGAAAATTG CAAAACAAAT TTTCTAACAC
  TGGTTTTTGG TACAGTATGA ATCTCAGAAT CCAATTAATT AAAAAACATA CTAAAGTCTC
  TAAATTGAGC TACTCTTAAG TTCCCATTTC TACATGCACC AAAGCGTAGG GATCTATATT
  Y
  CAAATTCTTG GTTCCTCTTT GGCATTCCTA GGATTATTTA CGGTCACTGT GGTGTCCTCT
  GTGTTCTAGC AGAGAGCCAC ACTGGAGAAA TCGCAACTGG CAGTCAATGT TTAACTGGTA
  CTCCACCTGG ACATTCCATT CTGTTTCAAG CTTTGTTCTT CAATAATTGA TTAGAGGAGA
  CACGAAGGAG GTAGCTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135371750	ENSMUSSNP3851375	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49633072					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287287 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1552 bp distal
Rr578509	regulatory region 578509	261 bp distal
Rr578510	regulatory region 578510	within coordinates
Rr578511	regulatory region 578511	1458 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron