rs49631988 SNP Detail

Summary

• ID
  rs49631988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139907791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTCTAGCGG ACCTGAGTAA GTTCCTAGCA CCACTCGCTG
  GCTTACATCC ATCCTTGATT CCCCCAGATG CCCTCTACTG GCCTGCACGG ATATGCCCAT
  R
  CTCGCGGTGC AGACATTATG ATGCAAGCAG TCACACACAT AAACTAAAAT AACCCTCTCC
  CCTCCCCCAA AAAAAGGCAA AACCAATCTA TCCGTGCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147670552	ENSMUSSNP6779428	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49631988					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139907791 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12337	CpG island 12337			445 bp proximal
Rr397340	regulatory region 397340			795 bp upstream
Rr566073	regulatory region 566073			within coordinates
Rr566074	regulatory region 566074			15 bp distal
Rr566075	regulatory region 566075			573 bp proximal
Rr566076	regulatory region 566076			879 bp proximal
Tasp1	taspase, threonine aspartase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26542	transcription start site region 26542			24 bp upstream
Tssr26543	transcription start site region 26543			790 bp downstream