rs49626248 SNP Detail

Summary

• ID
  rs49626248
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107161836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTGAAG ATTATAGACA
  CCTGACACCA TGCCTGATTT GCTGAGCACT GTTTTGTTCT TATTTCTGGA TTGGGGATGA
  AACCCAGAGT CTTGTGTGTG CTAGGCAAAC TCTCTAGCCA GTAGTTTTTG ATACAGTTCT
  CATTATATAC CCCAGGTTGG CTCTGAACGC CAATCCTCCT GCCTCTGTTT CCCTAGTGCT
  G
  GGACAGCAGG CGTTTGCCAC CACACCTGGA AAACAGAACT CTTTTTAACT GAGAGAAGAC
  AGTTAACAGA CACAAGTGAG TTCCATGAGC TGGCCCTGGG TCAGGTGGCT TCCAGGGAAC
  TGCTCGTCAG ACTGTCTCCA GCAATTTGTT CTGTCCCACC AGTGTCTGTC CCACCGGAAA
  CACAGCATAA AAACCACTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147177031	ENSMUSSNP6306512	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49626248					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107161836 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dio1	deiodinase, iodothyronine, type I			Intron
				Noncoding-Transcript-Variant
Rr596967	regulatory region 596967			1242 bp distal
Rr596968	regulatory region 596968			792 bp distal